Gene and enhancer trap tagging of vascular-expressed genes in poplar trees.
Identifieur interne : 004258 ( Main/Exploration ); précédent : 004257; suivant : 004259Gene and enhancer trap tagging of vascular-expressed genes in poplar trees.
Auteurs : Andrew Groover [États-Unis] ; Joseph R. Fontana ; Gayle Dupper ; Caiping Ma ; Robert Martienssen ; Steven Strauss ; Richard MeilanSource :
- Plant physiology [ 0032-0889 ] ; 2004.
Descripteurs français
- KwdFr :
- ADN complémentaire (composition chimique), ADN complémentaire (génétique), Analyse de profil d'expression de gènes (méthodes), Analyse de séquence d'ADN (MeSH), Données de séquences moléculaires (MeSH), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Feuilles de plante (génétique), Feuilles de plante (physiologie), Génome végétal (MeSH), Populus (génétique), Populus (physiologie), Protéines végétales (génétique), Protéines végétales (métabolisme), Similitude de séquences d'acides aminés (MeSH), Sites étiquetés par des séquences (MeSH), Séquence d'acides aminés (MeSH), Tiges de plante (génétique), Tiges de plante (physiologie), Transport biologique (génétique), Transport biologique (physiologie).
- MESH :
- composition chimique : ADN complémentaire.
- génétique : ADN complémentaire, Facteurs de transcription, Feuilles de plante, Populus, Protéines végétales, Tiges de plante, Transport biologique.
- métabolisme : Facteurs de transcription, Protéines végétales.
- méthodes : Analyse de profil d'expression de gènes.
- physiologie : Feuilles de plante, Populus, Tiges de plante, Transport biologique.
- Analyse de séquence d'ADN, Données de séquences moléculaires, Génome végétal, Similitude de séquences d'acides aminés, Sites étiquetés par des séquences, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Biological Transport (genetics), Biological Transport (physiology), DNA, Complementary (chemistry), DNA, Complementary (genetics), Gene Expression Profiling (methods), Genome, Plant (MeSH), Molecular Sequence Data (MeSH), Plant Leaves (genetics), Plant Leaves (physiology), Plant Proteins (genetics), Plant Proteins (metabolism), Plant Stems (genetics), Plant Stems (physiology), Populus (genetics), Populus (physiology), Sequence Analysis, DNA (MeSH), Sequence Homology, Amino Acid (MeSH), Sequence Tagged Sites (MeSH), Transcription Factors (genetics), Transcription Factors (metabolism).
- MESH :
- chemical , chemistry : DNA, Complementary.
- genetics : Biological Transport, DNA, Complementary, Plant Leaves, Plant Proteins, Plant Stems, Populus, Transcription Factors.
- chemical , metabolism : Plant Proteins, Transcription Factors.
- methods : Gene Expression Profiling.
- physiology : Biological Transport, Plant Leaves, Plant Stems, Populus.
- Amino Acid Sequence, Genome, Plant, Molecular Sequence Data, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Sequence Tagged Sites.
Abstract
We report a gene discovery system for poplar trees based on gene and enhancer traps. Gene and enhancer trap vectors carrying the beta-glucuronidase (GUS) reporter gene were inserted into the poplar genome via Agrobacterium tumefaciens transformation, where they reveal the expression pattern of genes at or near the insertion sites. Because GUS expression phenotypes are dominant and are scored in primary transformants, this system does not require rounds of sexual recombination, a typical barrier to developmental genetic studies in trees. Gene and enhancer trap lines defining genes expressed during primary and secondary vascular development were identified and characterized. Collectively, the vascular gene expression patterns revealed that approximately 40% of genes expressed in leaves were expressed exclusively in the veins, indicating that a large set of genes is required for vascular development and function. Also, significant overlap was found between the sets of genes responsible for development and function of secondary vascular tissues of stems and primary vascular tissues in other organs of the plant, likely reflecting the common evolutionary origin of these tissues. Chromosomal DNA flanking insertion sites was amplified by thermal asymmetric interlaced PCR and sequenced and used to identify insertion sites by reference to the nascent Populus trichocarpa genome sequence. Extension of the system was demonstrated through isolation of full-length cDNAs for five genes of interest, including a new class of vascular-expressed gene tagged by enhancer trap line cET-1-pop1-145. Poplar gene and enhancer traps provide a new resource that allows plant biologists to directly reference the poplar genome sequence and identify novel genes of interest in forest biology.
DOI: 10.1104/pp.103.034330
PubMed: 15051863
PubMed Central: PMC419847
Affiliations:
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Gene and enhancer trap vectors carrying the beta-glucuronidase (GUS) reporter gene were inserted into the poplar genome via Agrobacterium tumefaciens transformation, where they reveal the expression pattern of genes at or near the insertion sites. Because GUS expression phenotypes are dominant and are scored in primary transformants, this system does not require rounds of sexual recombination, a typical barrier to developmental genetic studies in trees. Gene and enhancer trap lines defining genes expressed during primary and secondary vascular development were identified and characterized. Collectively, the vascular gene expression patterns revealed that approximately 40% of genes expressed in leaves were expressed exclusively in the veins, indicating that a large set of genes is required for vascular development and function. Also, significant overlap was found between the sets of genes responsible for development and function of secondary vascular tissues of stems and primary vascular tissues in other organs of the plant, likely reflecting the common evolutionary origin of these tissues. Chromosomal DNA flanking insertion sites was amplified by thermal asymmetric interlaced PCR and sequenced and used to identify insertion sites by reference to the nascent Populus trichocarpa genome sequence. Extension of the system was demonstrated through isolation of full-length cDNAs for five genes of interest, including a new class of vascular-expressed gene tagged by enhancer trap line cET-1-pop1-145. Poplar gene and enhancer traps provide a new resource that allows plant biologists to directly reference the poplar genome sequence and identify novel genes of interest in forest biology.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15051863</PMID><DateCompleted><Year>2004</Year><Month>08</Month><Day>19</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0032-0889</ISSN><JournalIssue CitedMedium="Print"><Volume>134</Volume><Issue>4</Issue><PubDate><Year>2004</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Plant physiology</Title><ISOAbbreviation>Plant Physiol</ISOAbbreviation></Journal><ArticleTitle>Gene and enhancer trap tagging of vascular-expressed genes in poplar trees.</ArticleTitle><Pagination><MedlinePgn>1742-51</MedlinePgn></Pagination><Abstract><AbstractText>We report a gene discovery system for poplar trees based on gene and enhancer traps. Gene and enhancer trap vectors carrying the beta-glucuronidase (GUS) reporter gene were inserted into the poplar genome via Agrobacterium tumefaciens transformation, where they reveal the expression pattern of genes at or near the insertion sites. Because GUS expression phenotypes are dominant and are scored in primary transformants, this system does not require rounds of sexual recombination, a typical barrier to developmental genetic studies in trees. Gene and enhancer trap lines defining genes expressed during primary and secondary vascular development were identified and characterized. Collectively, the vascular gene expression patterns revealed that approximately 40% of genes expressed in leaves were expressed exclusively in the veins, indicating that a large set of genes is required for vascular development and function. Also, significant overlap was found between the sets of genes responsible for development and function of secondary vascular tissues of stems and primary vascular tissues in other organs of the plant, likely reflecting the common evolutionary origin of these tissues. Chromosomal DNA flanking insertion sites was amplified by thermal asymmetric interlaced PCR and sequenced and used to identify insertion sites by reference to the nascent Populus trichocarpa genome sequence. Extension of the system was demonstrated through isolation of full-length cDNAs for five genes of interest, including a new class of vascular-expressed gene tagged by enhancer trap line cET-1-pop1-145. 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ValidYN="Y"><LastName>Strauss</LastName><ForeName>Steven</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Meilan</LastName><ForeName>Richard</ForeName><Initials>R</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>AY442255</AccessionNumber><AccessionNumber>AY442256</AccessionNumber><AccessionNumber>AY442257</AccessionNumber><AccessionNumber>AY442258</AccessionNumber><AccessionNumber>AY442259</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2004</Year><Month>03</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant 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UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018547" MajorTopicYN="N">Plant Stems</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016324" MajorTopicYN="Y">Sequence Tagged Sites</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription 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IdType="pubmed">7622040</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><noCountry><name sortKey="Dupper, Gayle" sort="Dupper, Gayle" uniqKey="Dupper G" first="Gayle" last="Dupper">Gayle Dupper</name><name sortKey="Fontana, Joseph R" sort="Fontana, Joseph R" uniqKey="Fontana J" first="Joseph R" last="Fontana">Joseph R. Fontana</name><name sortKey="Ma, Caiping" sort="Ma, Caiping" uniqKey="Ma C" first="Caiping" last="Ma">Caiping Ma</name><name sortKey="Martienssen, Robert" sort="Martienssen, Robert" uniqKey="Martienssen R" first="Robert" last="Martienssen">Robert Martienssen</name><name sortKey="Meilan, Richard" sort="Meilan, Richard" uniqKey="Meilan R" first="Richard" last="Meilan">Richard Meilan</name><name sortKey="Strauss, Steven" sort="Strauss, Steven" uniqKey="Strauss S" first="Steven" last="Strauss">Steven Strauss</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Groover, Andrew" sort="Groover, Andrew" uniqKey="Groover A" first="Andrew" last="Groover">Andrew Groover</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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